Reproducible Research

We’re currently preparing a series of guides for students which will cover the use of essential software tools for research. The modules will cover what we believe are the most important pieces of software for students to become proficient data managers and efficient paper and report writers.
All the tools listed are open source and allow for collaborative document management. The core principles are well described in Christopher Gandrud’s excellent book:
Reproducible Research – with R & RStudio

In preparing the lessons, it’s been interesting to survey the tools that we and other researchers use regularly and look at why we use these tools. Here’s an outline of the lessons:

  • Document Management
    • LaTeX
    • LaTeX extensions (templates, knitr, texcount)
    • Collaborative Editing (ShareLaTex, Etherpad)
    • Bibliographic Managament (BibTex, Zotero)
    • Version Management with Git
    • Cloud Storage and Security (Owncloud, encfs)
  • Statistics
    • R and R-studio
    • Shiny and knitr
  • Programming for Researchers
    • Why you’ll need to program and why it’s no harder than cooking
    • OS basics and BASH
    • MATLAB and why (not) to use it
    • Python
  • Graphics
    • Image formats: vector graphics vs bitmaps
    • SVG and the fine art of Inkscape
    • Dynamic graphics with Processing
  • Web Publishing
    • HTML is your friend
    • Intellectual Property and Privacy
    • Running your own blog
    • Integrating with LaTeX
  • Hardware
    • Basic Electronics
    • Arduino
    • Principles of Neuroimaging
    • Putting it all together

The resources for these lessons will be published as open documents in the future. We’d be interested to hear your comments if there are other subjects that you’d be interested in.

166 thoughts on “Reproducible Research

  1. Pingback: generic ventolin

  2. Pingback: viagra online cheap

  3. Pingback: cialis without doctor prescription

  4. Pingback: buy ciprofloxacin

  5. Pingback: naltrexone buy on line

  6. Pingback: how to use viagra

  7. Pingback: chloroquine brand name

  8. Pingback: buy hydroxychloroquine

  9. Pingback: female pink viagra 100mg pills

  10. Pingback: buy cialis 20mg

  11. Pingback: best viagra alternative

  12. Pingback: coupon for bimatoprost

  13. Pingback: viagra 25mg

  14. Pingback: effects of 150 mg of viagra

  15. Pingback: buy hydroxychloroquine online

  16. Pingback: cialis 20 mg

  17. Pingback: ordering cialis online

  18. Pingback: buy cialis online

  19. Pingback: viagra dosage

  20. Pingback: order viagra

  21. Pingback: Cialis 80 mg australia

  22. Pingback: Cialis 40mg no prescription

  23. Pingback: Cialis 40 mg tablet

  24. Pingback: Cialis 20 mg online

  25. Pingback: sildenafil 150mg prices

  26. Pingback: tadalafil 60mg purchase

  27. Pingback: levitra 40 mg tablets

  28. Pingback: lasix 100mg online pharmacy

  29. Pingback: furosemide 100 mg without prescription

  30. Pingback: cheapest propecia 5mg

  31. Pingback: viagra dosage

  32. Pingback: lexapro 20mg price

  33. Pingback: generic viagra names

  34. Pingback: abilify 20mg coupon

  35. Pingback: actos 30mg pharmacy

  36. Pingback: buy aldactone 25mg

  37. Pingback: buy allegra 180mg

  38. Pingback: order allopurinol 300mg

  39. Pingback: amaryl 2mg tablet

  40. Pingback: where can i buy amoxicillin 500 mg

  41. Pingback: ampicillin 500mg over the counter

  42. Pingback: antabuse 500mg united states

  43. Pingback: antivert 25mg without prescription

  44. Pingback: arava 10 mg prices

  45. Pingback: strattera 40mg canada

  46. Pingback: viagra american express

  47. Pingback: aricept 10mg price

  48. Pingback: arimidex 1mg medication

  49. Pingback: tamoxifen 20mg nz

  50. Pingback: generic cialis in uk

  51. Pingback: ashwagandha 60caps australia

  52. Pingback: atarax 10 mg nz

  53. Pingback: augmentin 500/125 mg without a prescription

  54. Pingback: avapro 300 mg no prescription

  55. Pingback: is it illegal to buy viagra online

  56. Pingback: avodart 0,5mg nz

  57. Pingback: baclofen 25 mg purchase

  58. Pingback: cheap bactrim 800/160mg

  59. Pingback: benicar 10mg canada

  60. Pingback: cialis generic no prescription

  61. Pingback: Biaxin 250 mg pharmacy

  62. Pingback: Premarin 0,3 mg tablets

  63. Pingback: cialis youtube

  64. Pingback: buspar 5 mg united states

  65. Pingback: cardizem without prescription

  66. Pingback: viagra overnight delivery usa

  67. Pingback: casodex without prescription

  68. Pingback: catapres 100mcg otc

  69. Pingback: ceclor 250mg over the counter

  70. Pingback: ceftin 250mg usa

  71. Pingback: celebrex 100mg coupon

  72. Pingback: celexa without a doctor prescription

  73. Pingback: how to buy cephalexin

  74. Pingback: cipro 500mg usa

  75. Pingback: best real casino online

  76. Pingback: slot games

  77. Pingback: casino

  78. Pingback: online casino usa

  79. Pingback: play casino

  80. Pingback: online slots for real money

  81. Pingback: casino online games for real money

  82. Pingback: online slots real money

  83. Pingback: online casino games real money

  84. Pingback: aaa car insurance quotes reviews

  85. Pingback: usaa car insurance quotes

  86. Pingback: affordable insurance

  87. Pingback: generic viagra scam

  88. Pingback: auto-owners insurance

  89. Pingback: first acceptance insurance

  90. Pingback: car insurance quotes online quotes

  91. Pingback: usaa car insurance quotes claims

  92. Pingback: cheap car insurance quotes in michigan

  93. Pingback: car insurance quotes online

  94. Pingback: geico car insurance

  95. Pingback: personal loans california

  96. Pingback: payday loans utah

  97. Pingback: payday loans omaha ne

  98. Pingback: installment loans near me

  99. Pingback: quick loans georgia

  100. Pingback: tadalafil 5mg

  101. Pingback: bad credit loans pa

  102. Pingback: cialis dose

  103. Pingback: teva sildenafil

  104. Pingback: tadalafil generic

  105. Pingback: cbd oil for sale vape

  106. Pingback: difference between cbd oil and hemp oil

  107. Pingback: marley drug viagra

  108. Pingback: cost of viagra

  109. Pingback: best rated cbd hemp oil for pain

  110. Pingback: cbd oil sale

  111. Pingback: cialis wikipedia

  112. Pingback: sildenafil vs viagra

  113. Pingback: viagra instructions

  114. Pingback: cbd oil for cancer pain

  115. Pingback: charlotts web cbd oil for sale

  116. Pingback: tadalafil online

  117. Pingback: generic for viagra

  118. Pingback: cbd oil and fingolimod

  119. Pingback: generic viagra cost

  120. Pingback: cbd oil for sale vaporizer

  121. Pingback: free viagra coupons

  122. Pingback: pure cbd oil for pain

  123. Pingback: viagra erection

  124. Pingback: essay writer online

  125. Pingback: viagra glasgow

  126. Pingback: buy levitra in england

  127. Pingback: buy essay online

  128. Pingback: canada viagra

  129. Pingback: custom essay writers

  130. Pingback: 40mg atorvastatin

  131. Pingback: write essay online

  132. Pingback: money can buy happiness essay

  133. Pingback: how to write an intro for an essay

  134. Pingback: mass effect assignment

  135. Pingback: buy essay cheap

  136. Pingback: clomid tablet

  137. Pingback: clonidine 0,1 mg cost

  138. Pingback: buying cialis online

  139. Pingback: clozaril 100 mg otc

  140. Pingback: viagra and alcohol

  141. Pingback: colchicine over the counter

  142. Pingback: cheap symbicort inhaler

  143. Pingback: tadalafil generic cialis

  144. Pingback: coreg 25 mg pills

  145. Pingback: i need help with my college essay

  146. Pingback: coupons for viagra

  147. Pingback: compazine otc

  148. Pingback: cost of coumadin 5 mg

  149. Pingback: what is better cialis or viagra or levitra

  150. Pingback: how to buy cozaar

  151. Pingback: buy liquid viagra

  152. Pingback: crestor online

  153. Pingback: help writing a dissertation

  154. Pingback: personal statement essay help

  155. Pingback: cymbalta united states

  156. Pingback: cheap law essay writing service

  157. Pingback: essay custom

  158. Pingback: cheap dapsone caps

  159. Pingback: where can i find someone to write my paper

  160. Pingback: research paper writing service uk

  161. Pingback: help with a thesis statement

  162. Pingback: thesis assistance

  163. Pingback: sildenafil without prescription

  164. Pingback: ddavp uk

  165. Pingback: depakote without a prescription

  166. Pingback: diamox 250 mg united states

Comments are closed.